Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many
Identifieur interne : 003D62 ( Main/Exploration ); précédent : 003D61; suivant : 003D63Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many
Auteurs : John Kovaliski [Australie] ; Ron Sinclair [Australie] ; Greg Mutze [Australie] ; David Peacock [Australie] ; Tanja Strive [Australie] ; Joana Abrantes [Portugal, France] ; Pedro J. Esteves [France, Portugal] ; Edward C. Holmes [Australie]Source :
- Molecular Ecology [ 0962-1083 ] ; 2014-02.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence d'ADN, Animaux, Australie, Données de séquences moléculaires, Flux des gènes, Infections à Caliciviridae (médecine vétérinaire), Infections à Caliciviridae (virologie), Infections à Caliciviridae (épidémiologie), Lapins, Marqueurs génétiques, Phylogénie, Protéines virales structurales (génétique), Variation génétique, Virus de la maladie hémorragique du lapin (génétique), Épidémiologie moléculaire, Évolution moléculaire.
- MESH :
- génétique : ARN viral, Protéines virales structurales, Virus de la maladie hémorragique du lapin.
- médecine vétérinaire : Infections à Caliciviridae.
- virologie : Infections à Caliciviridae.
- épidémiologie : Infections à Caliciviridae.
- Analyse de séquence d'ADN, Animaux, Australie, Données de séquences moléculaires, Flux des gènes, Lapins, Marqueurs génétiques, Phylogénie, Variation génétique, Épidémiologie moléculaire, Évolution moléculaire.
- Wicri :
- geographic : Australie.
English descriptors
- KwdEn :
- Animals, Australia, Caliciviridae Infections (epidemiology), Caliciviridae Infections (veterinary), Caliciviridae Infections (virology), Evolution, Molecular, Gene Flow, Genetic Markers, Genetic Variation, Hemorrhagic Disease Virus, Rabbit (genetics), Molecular Epidemiology, Molecular Sequence Data, Phylogeny, RNA, Viral (genetics), Rabbits, Sequence Analysis, DNA, Viral Structural Proteins (genetics).
- MESH :
- chemical , genetics : RNA, Viral, Viral Structural Proteins.
- chemical : Genetic Markers.
- geographic : Australia.
- epidemiology : Caliciviridae Infections.
- genetics : Hemorrhagic Disease Virus, Rabbit.
- veterinary : Caliciviridae Infections.
- virology : Caliciviridae Infections.
- Animals, Evolution, Molecular, Gene Flow, Genetic Variation, Molecular Epidemiology, Molecular Sequence Data, Phylogeny, Rabbits, Sequence Analysis, DNA.
Abstract
Rabbit Haemorrhagic Disease Virus (RHDV) was introduced into Australia in 1995 as a biological control agent against the wild European rabbit (Oryctolagus cuniculus). We evaluated its evolution over a 16‐year period (1995–2011) by examining 50 isolates collected throughout Australia, as well as the original inoculum strains. Phylogenetic analysis of capsid protein VP60 sequences of the Australian isolates, compared with those sampled globally, revealed that they form a monophyletic group with the inoculum strains (CAPM V‐351 and RHDV351INOC). Strikingly, despite more than 3000 rereleases of RHDV351INOC since 1995, only a single viral lineage has sustained its transmission in the long‐term, indicative of a major competitive advantage. In addition, we find evidence for widespread viral gene flow, in which multiple lineages entered individual geographic locations, resulting in a marked turnover of viral lineages with time, as well as a continual increase in viral genetic diversity. The rate of RHDV evolution recorded in Australia −4.0 (3.3–4.7) × 10−3 nucleotide substitutions per site per year – was higher than previously observed in RHDV, and evidence for adaptive evolution was obtained at two VP60 residues. Finally, more intensive study of a single rabbit population (Turretfield) in South Australia provided no evidence for viral persistence between outbreaks, with genetic diversity instead generated by continual strain importation.
Url:
- https://api.istex.fr/document/228A244EBA717B1A9DEEB914F8A21B202E920845/fulltext/pdf
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595043
DOI: 10.1111/mec.12596
Affiliations:
- Australie, France, Portugal
- Nouvelle-Galles du Sud, Pays de la Loire
- Nantes, Sydney
- Université de Nantes, Université de Sydney
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Le document en format XML
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Holmes</name><affiliation wicri:level="4"><country xml:lang="fr">Australie</country><wicri:regionArea>Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, NSW, 2006, Sydney</wicri:regionArea><placeName><settlement type="city">Sydney</settlement><region type="état">Nouvelle-Galles du Sud</region><settlement type="city">Sydney</settlement></placeName><orgName type="university">Université de Sydney</orgName></affiliation><affiliation wicri:level="1"><country wicri:rule="url">Australie</country></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Molecular Ecology</title><title level="j" type="alt">MOLECULAR ECOLOGY</title><idno type="ISSN">0962-1083</idno><idno type="eISSN">1365-294X</idno><imprint><biblScope unit="vol">23</biblScope><biblScope unit="issue">2</biblScope><biblScope unit="page" from="408">408</biblScope><biblScope unit="page" to="420">420</biblScope><biblScope unit="page-count">13</biblScope><date type="published" when="2014-02">2014-02</date></imprint><idno type="ISSN">0962-1083</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0962-1083</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Australia</term><term>Caliciviridae Infections (epidemiology)</term><term>Caliciviridae Infections (veterinary)</term><term>Caliciviridae Infections (virology)</term><term>Evolution, Molecular</term><term>Gene Flow</term><term>Genetic Markers</term><term>Genetic Variation</term><term>Hemorrhagic Disease Virus, Rabbit (genetics)</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>RNA, Viral (genetics)</term><term>Rabbits</term><term>Sequence Analysis, DNA</term><term>Viral Structural Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Australie</term><term>Données de séquences moléculaires</term><term>Flux des gènes</term><term>Infections à Caliciviridae (médecine vétérinaire)</term><term>Infections à Caliciviridae (virologie)</term><term>Infections à Caliciviridae (épidémiologie)</term><term>Lapins</term><term>Marqueurs génétiques</term><term>Phylogénie</term><term>Protéines virales structurales (génétique)</term><term>Variation génétique</term><term>Virus de la maladie hémorragique du lapin (génétique)</term><term>Épidémiologie moléculaire</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term><term>Viral Structural Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Australia</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Caliciviridae Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Hemorrhagic Disease Virus, Rabbit</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Protéines virales structurales</term><term>Virus de la maladie hémorragique du lapin</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Caliciviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Caliciviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à Caliciviridae</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Caliciviridae Infections</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Infections à Caliciviridae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Gene Flow</term><term>Genetic Variation</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Rabbits</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Australie</term><term>Données de séquences moléculaires</term><term>Flux des gènes</term><term>Lapins</term><term>Marqueurs génétiques</term><term>Phylogénie</term><term>Variation génétique</term><term>Épidémiologie moléculaire</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Australie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract">Rabbit Haemorrhagic Disease Virus (RHDV) was introduced into Australia in 1995 as a biological control agent against the wild European rabbit (Oryctolagus cuniculus). We evaluated its evolution over a 16‐year period (1995–2011) by examining 50 isolates collected throughout Australia, as well as the original inoculum strains. Phylogenetic analysis of capsid protein VP60 sequences of the Australian isolates, compared with those sampled globally, revealed that they form a monophyletic group with the inoculum strains (CAPM V‐351 and RHDV351INOC). Strikingly, despite more than 3000 rereleases of RHDV351INOC since 1995, only a single viral lineage has sustained its transmission in the long‐term, indicative of a major competitive advantage. In addition, we find evidence for widespread viral gene flow, in which multiple lineages entered individual geographic locations, resulting in a marked turnover of viral lineages with time, as well as a continual increase in viral genetic diversity. The rate of RHDV evolution recorded in Australia −4.0 (3.3–4.7) × 10−3 nucleotide substitutions per site per year – was higher than previously observed in RHDV, and evidence for adaptive evolution was obtained at two VP60 residues. Finally, more intensive study of a single rabbit population (Turretfield) in South Australia provided no evidence for viral persistence between outbreaks, with genetic diversity instead generated by continual strain importation.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Portugal</li></country><region><li>Nouvelle-Galles du Sud</li><li>Pays de la Loire</li></region><settlement><li>Nantes</li><li>Sydney</li></settlement><orgName><li>Université de Nantes</li><li>Université de Sydney</li></orgName></list><tree><country name="Australie"><noRegion><name sortKey="Kovaliski, John" sort="Kovaliski, John" uniqKey="Kovaliski J" first="John" last="Kovaliski">John Kovaliski</name></noRegion><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name><name sortKey="Kovaliski, John" sort="Kovaliski, John" uniqKey="Kovaliski J" first="John" last="Kovaliski">John Kovaliski</name><name sortKey="Mutze, Greg" sort="Mutze, Greg" uniqKey="Mutze G" first="Greg" last="Mutze">Greg Mutze</name><name sortKey="Mutze, Greg" sort="Mutze, Greg" uniqKey="Mutze G" first="Greg" last="Mutze">Greg Mutze</name><name sortKey="Peacock, David" sort="Peacock, David" uniqKey="Peacock D" first="David" last="Peacock">David Peacock</name><name sortKey="Peacock, David" sort="Peacock, David" uniqKey="Peacock D" first="David" last="Peacock">David Peacock</name><name sortKey="Sinclair, Ron" sort="Sinclair, Ron" uniqKey="Sinclair R" first="Ron" last="Sinclair">Ron Sinclair</name><name sortKey="Sinclair, Ron" sort="Sinclair, Ron" uniqKey="Sinclair R" first="Ron" last="Sinclair">Ron Sinclair</name><name sortKey="Strive, Tanja" sort="Strive, Tanja" uniqKey="Strive T" first="Tanja" last="Strive">Tanja Strive</name><name sortKey="Strive, Tanja" sort="Strive, Tanja" uniqKey="Strive T" first="Tanja" last="Strive">Tanja Strive</name></country><country name="Portugal"><noRegion><name sortKey="Abrantes, Joana" sort="Abrantes, Joana" uniqKey="Abrantes J" first="Joana" last="Abrantes">Joana Abrantes</name></noRegion><name sortKey="Esteves, Pedro J" sort="Esteves, Pedro J" uniqKey="Esteves P" first="Pedro J." last="Esteves">Pedro J. Esteves</name></country><country name="France"><region name="Pays de la Loire"><name sortKey="Abrantes, Joana" sort="Abrantes, Joana" uniqKey="Abrantes J" first="Joana" last="Abrantes">Joana Abrantes</name></region><name sortKey="Esteves, Pedro J" sort="Esteves, Pedro J" uniqKey="Esteves P" first="Pedro J." last="Esteves">Pedro J. Esteves</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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